Package index • plotthis

Plotting

Functions for plotting

SankeyPlot() AlluvialPlot(): Sankey / Alluvial Plot

AreaPlot(): Area plot

BarPlot() SplitBarPlot() WaterfallPlot(): Bar Plot

BoxPlot() ViolinPlot(): Box / Violin Plot

ChordPlot() CircosPlot(): Chord / Circos plot

ClustreePlot(): Clustree Plot

CorPlot(): CorPlot

CorPairsPlot(): CorPairsPlot

DensityPlot() Histogram(): Density Plot / Histogram

DimPlot() FeatureDimPlot(): DimPLot / FeatureDimPlot

DotPlot() LollipopPlot(): Dot Plot / Scatter Plot / Lollipop Plot

PrepareEnrichrResult() EnrichMap() EnrichNetwork(): Enrichment Map/Network

PrepareFGSEAResult() GSEASummaryPlot() GSEAPlot(): GSEA plots

Heatmap(): Heatmap

LinePlot(): Line Plot

Network(): Network

RidgePlot(): Ridge Plot

PieChart(): Pie Chart

RadarPlot() SpiderPlot(): Radar plot / Spider plot

RarefactionPlot(): RarefactionPlot

RingPlot(): Ring Plot

ScatterPlot(): Scatter Plot

TrendPlot(): Trend plot

VolcanoPlot(): Volcano plot

WordCloudPlot(): Word Cloud Plot

PrepareUpsetData() UpsetPlot(): Upset Plot

PrepareVennData() VennDiagram(): VennDiagram

Theming

Functions for plot theming

palette_this(): Color palettes collected in plotthis.

theme_this(): A ggplot2 theme and palettes for plotthis Borrowed from the theme_this function in the SCP pipeline

theme_blank(): Blank theme

show_palettes(): Show the color palettes

element_textbox() element_grob(<element_textbox>): Theme element that add a box to the text

Data

Built-in data for plotting or examples

enrich_example: A example of clusterProfiler enrichment result

enrich_multidb_example: A example of clusterProfiler enrichment result with multiple databases

gsea_example: A example of GSEA result from fgsea package

palette_list: A list of palettes for use in data visualization

words_excluded: Excluded words in keyword enrichment analysis and extraction