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Plotting

Functions for plotting

SankeyPlot() AlluvialPlot()
Sankey / Alluvial Plot
AreaPlot()
Area plot
BarPlot() SplitBarPlot() WaterfallPlot()
Bar Plot
BoxPlot() ViolinPlot()
Box / Violin Plot
ChordPlot() CircosPlot()
Chord / Circos plot
ClustreePlot()
Clustree Plot
CorPlot()
CorPlot
CorPairsPlot()
CorPairsPlot
DensityPlot() Histogram()
Density Plot / Histogram
DimPlot() FeatureDimPlot()
DimPLot / FeatureDimPlot
DotPlot() LollipopPlot()
Dot Plot / Scatter Plot / Lollipop Plot
EnrichMap() EnrichNetwork()
Enrichment Map/Network
GSEASummaryPlot() GSEAPlot()
GSEA plots
Heatmap()
Heatmap
LinePlot()
Line Plot
ManhattanPlot()
ManhattanPlot
Network()
Network
QQPlot()
QQ plot
RidgePlot()
Ridge Plot
PieChart()
Pie Chart
RadarPlot() SpiderPlot()
Radar plot / Spider plot
RarefactionPlot()
RarefactionPlot
RingPlot()
Ring Plot
ROCCurve()
ROC curve
ScatterPlot()
Scatter Plot
SpatImagePlot() SpatMasksPlot() SpatShapesPlot() SpatPointsPlot()
Plots for spatial elements
TrendPlot()
Trend plot
VelocityPlot()
Cell velocity plot
VolcanoPlot()
Volcano plot
WordCloudPlot()
Word Cloud Plot
UpsetPlot()
Upset Plot
VennDiagram()
Venn diagram

Theming

Functions for plot theming

palette_this()
Color palettes collected in plotthis.
theme_this()
A ggplot2 theme and palettes for plotthis Borrowed from the theme_this function in the SCP pipeline
theme_blank()
Blank theme
theme_box()
Box theme
show_palettes()
Show the color palettes
element_textbox() element_grob(<element_textbox>)
Theme element that add a box to the text

Data

Built-in data for plotting or examples

enrich_example
An example of clusterProfiler enrichment result
enrich_multidb_example
An example of clusterProfiler enrichment result with multiple databases
gsea_example
An example of GSEA result from fgsea package
palette_list
A list of palettes for use in data visualization
words_excluded
Excluded words in keyword enrichment analysis and extraction
dim_example
An example data for dimensionality reduction plot