Package index • plotthis

Plotting

Functions for plotting

SankeyPlot() AlluvialPlot(): Sankey / Alluvial Plot

AreaPlot(): Area plot

BarPlot() SplitBarPlot() WaterfallPlot(): Bar Plot

BoxPlot() ViolinPlot(): Box / Violin Plot

ChordPlot() CircosPlot(): Chord / Circos plot

ClustreePlot(): Clustree Plot

CorPlot(): CorPlot

CorPairsPlot(): CorPairsPlot

DensityPlot() Histogram(): Density Plot / Histogram

DimPlot() FeatureDimPlot(): DimPLot / FeatureDimPlot

DotPlot() LollipopPlot(): Dot Plot / Scatter Plot / Lollipop Plot

EnrichMap() EnrichNetwork(): Enrichment Map/Network

GSEASummaryPlot() GSEAPlot(): GSEA plots

Heatmap(): Heatmap

JitterPlot(): Jitter Plot

LinePlot(): Line Plot

ManhattanPlot(): ManhattanPlot

Network(): Network

QQPlot(): QQ plot

RidgePlot(): Ridge Plot

PieChart(): Pie Chart

RadarPlot() SpiderPlot(): Radar plot / Spider plot

RarefactionPlot(): RarefactionPlot

RingPlot(): Ring Plot

ROCCurve(): ROC curve

ScatterPlot(): Scatter Plot

SpatImagePlot() SpatMasksPlot() SpatShapesPlot() SpatPointsPlot(): Plots for spatial elements

TrendPlot(): Trend plot

VelocityPlot(): Cell velocity plot

VolcanoPlot(): Volcano plot

WordCloudPlot(): Word Cloud Plot

UpsetPlot(): Upset Plot

VennDiagram(): Venn diagram

Theming

Functions for plot theming

palette_this(): Color palettes collected in plotthis.

theme_this(): A ggplot2 theme and palettes for plotthis Borrowed from the theme_this function in the SCP pipeline

theme_blank(): Blank theme

theme_box(): Box theme

show_palettes(): Show the color palettes

element_textbox() element_grob(<element_textbox>): Theme element that add a box to the text

Data

Built-in data for plotting or examples

enrich_example: An example of clusterProfiler enrichment result

enrich_multidb_example: An example of clusterProfiler enrichment result with multiple databases

gsea_example: An example of GSEA result from fgsea package

palette_list: A list of palettes for use in data visualization

words_excluded: Excluded words in keyword enrichment analysis and extraction

dim_example: An example data for dimensionality reduction plot