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scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

Installation

remotes::install_github("pwwang/scplotter")
# or
devtools::install_github("pwwang/scplotter")
# or using conda
$ conda install pwwang::r-scplotter

Spatial data

SpatDimPlot | SpatFeaturePlot

Visualization with LLMs

provider <- tidyprompt::llm_provider_openai(api_key = Sys.getenv("OPENAI_API_KEY"))
chat <- SCPlotterChat$new(provider = provider)
chat$ask("Generate a cell-cell communication plot for the cellphonedb_res data.")
# Tool identified:  CCCPlot
# Data object identified:  cellphonedb_res
# Running tool:  CCCPlot

chat$ask("Do a heatmap instead")
# Tool identified:  CCCPlot
# Data object identified:  cellphonedb_res
# Running tool:  CCCPlot