Package index
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gs_prepare() - Prepare gene sets for hitype
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hitype_score() - Calculate cell type scores
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hitype_assign() - Generate scores for cell types for each level
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hitype_score_models() - Score cells with the models trained by train_weights()
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RunHitype() - Run hitype_assign for a Seurat object
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train_weights() - Train weights for the markers
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find_markers() - Find marker genes for cell types
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summary(<hitype_result>) - Summarize the hitype_result object
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print(<hitype_result>) - Print the summary of the hitype_result object
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hitypedb_full - Gene sets from ScType (full version)
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hitypedb_short - Gene sets from ScType (short version)
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hitypedb_pbmc3k - Gene sets with weights trained from the PBMC 3k dataset