Calculate cell type scores

Usage

hitype_score(exprs, gs, scaled = FALSE, norm = "sqrt", use_sensitivity = TRUE)

exprs: Input scRNA-seq data matrix (rownames - gene names, colnames - cell names)
gs: The gene sets prepared by gs_prepare The gene_sets is used. One could also pass gs$gene_sets directly.
scaled: Whether the input data is scaled or not
norm: Normalization method for scoring. "sqrt" (default) divides by sqrt(n); "weight" divides by sum(abs(weights)).
use_sensitivity: Whether to multiply expression z-scores by marker sensitivity scores. Set to FALSE when using learned weights to avoid double-penalizing shared markers. Default is TRUE.

A list of matrices of cell type scores for each level (rownames - cell types, colnames - cell names)

Matt Mulvahill, Panwen Wang