Gene sets from ScType (short version)

The short marker database from ScType, bundled for convenience. It can be passed directly to gs_prepare:

Usage

hitypedb_short

Format

A data frame with columns commonly used by gs_prepare: cellName, tissueType, geneSymbolmore1, geneSymbolmore2 and level.

Source

https://raw.githubusercontent.com/IanevskiAleksandr/sc-type/master/ScTypeDB_short.xlsx

Details

gs <- gs_prepare(hitypedb_short, tissue_type = "Immune system")