TopExpressingGenesOfAllCells¶

Top expressing genes for clusters of all cells.

See also TopExpressingGenes.

Input¶

• srtobj: The seurat object in RDS format

Output¶

• outdir: Default: {{in.srtobj | stem}}.top_expressing_genes.
  The output directory for the tables and plots

Environment Variables¶

• dbs (list): Default: ['KEGG_2021_Human', 'MSigDB_Hallmark_2020'].
  The dbs to do enrichment analysis for significant markers See below for all libraries.
  https://maayanlab.cloud/Enrichr/#libraries
• n (type=int): Default: 250.
  The number of top expressing genes to find.
  
• subset: An expression to subset the cells for each case.