The following are some datasets with both scRNA-seq and scTCR-seq data available in the publications. The data were reanalyzed using immunopipe with the configurations provided in each repository, where the results are also available. In the README file of each repository, you can find the links to the original publications and the reports generated by immunopipe.

ID GEO Repository Condition
1 GSE144469 immunopipe-AdrienneML-2020 Melanoma and therapy
2 GSE176201 immunopipe-CheonIS-2021 COVID-19 lung tissue
3 GSE180268 immunopipe-EberhardtCS-2021 HPV and Head and Neck cancer
4 GSE114724 immunopipe-ElhamA-2018 Breast Cancer
5 GSE161192 immunopipe-GateD-2021 LB dementia
6 GSE179994 immunopipe-LiuB-2022 anti-PD-1 therapy in lung cancer
7 GSE148190 immunopipe-MahuronKM-2020 Skin cancer
8 GSE139555 immunopipe-ThomasW-2020 Anti-PD1 therapy
9 GSE145370 immunopipe-ZhengY-2020 Oesophageal cancer
ID # Individuals # Samples # Cells # matched TCR seqs
1 22 22 75,569 68,760
2 5 6 34,781 23,081
3 6 6 53,303 26,844
4 3 5 28,341 24,039
5 2 4 6,438 5,642
6 38 47 150,849 77,030
7 1 2 8,794 4,904
8 14 32 194,519 67,700
9 7 14 108,226 35,449
ID Reference
1 Luoma, Adrienne M., et al. 2020
2 Cheon, I. S., et al. 2021
3 Eberhardt, Christian S., et al. 2021
4 Alizadeh, Elham, et al. 2018
5 Gate, David, et al. 2021
6 Liu, B., et al. 2022
7 Mahuron, Kelly M., et al. 2020
8 Wu, Thomas D., et al. 2020
9 Zheng, Y., et al. 2020