Visualize contamination correction results of Seurat object

Usage

VizSeuratContamination(
  object,
  plot_type = c("ridge", "histogram", "bar", "violin", "box", "heatmap", "dot"),
  metric = c("contam", "contamination", "expr", "expression"),
  markers = NULL,
  ...
)

Arguments

object: A Seurat object with contamination correction results
plot_type: Type of plot to generate
metric: Metric to visualize, one of "contam", "contamination" and "expression". "contam" is an alias of "contamination". For scCDC, only sample-level contamination fraction is available. For decontX, cell-level contamination fraction is available.
markers: List of marker genes to visualize expression of contamination genes. For scCDC, the GCGs will be used by default.
...: Additional arguments to pass to the plot function.