Visualize Cell QC metrics of Seurat object — VizSeuratCellQC • biopipen.utils

Visualize Cell QC metrics of Seurat object

Usage

VizSeuratCellQC(
  object,
  features = c("nFeature_RNA", "nCount_RNA", "percent.mt", "percent.ribo", "percent.hb",
    "percent.plat"),
  plot_type = c("violin", "box", "scatter", "ridge"),
  scatter_x = "nCount_RNA",
  palette = "Set2",
  ...
)

Arguments

object: A Seurat object with cell QC metrics
features: Features to visualize
plot_type: Type of plot to generate One of 'violin', 'box', 'scatter', 'ridge'
scatter_x: Feature to use as x-axis in scatter plot. If it is one of the features, it will be removed from the features
palette: Color palette to use
...: Additional arguments to pass to the plot function

Value

The plot