Run seurat unsupervised clustering

Run seurat unsupervised clustering

Usage

RunSeuratClustering(
  object,
  RunPCAArgs = list(),
  RunUMAPArgs = list(),
  FindNeighborsArgs = list(),
  FindClustersArgs = list(),
  log = NULL,
  cache = NULL
)

Arguments

object

Seurat object

RunPCAArgs

Arguments to pass to Seurat::RunPCA()

RunUMAPArgs

Arguments to pass to Seurat::RunUMAP()

FindNeighborsArgs

Arguments to pass to Seurat::FindNeighbors()

FindClustersArgs

Arguments to pass to Seurat::FindClusters()

log

Logger

cache

Directory to cache the results. Set to FALSE to disable caching

Value

The Seurat object with clustering results