Run GSEA using fgsea

Usage

RunGSEA(ranks, genesets, ...)

Arguments

ranks: A named numeric vector of gene ranks
genesets: A list of gene sets
...: Additional arguments passed to fgsea::fgsea()

Value

A data frame with the results of the fGSEA analysis

Examples

if (FALSE) { # \dontrun{
exprs <- matrix(rnorm(1000), nrow = 100, ncol = 10)
colnames(exprs) <- paste0("Sample", 1:10)
rownames(exprs) <- paste0("Gene", 1:100)
classes <- c(rep("A", 5), rep("B", 5))
ranks <- RunGSEAPreRank(exprs, case = "A", control = "B", classes = classes)
genesets <- list(
    set1 = c("Gene1", "Gene2", "Gene3"),
    set2 = c("Gene4", "Gene5", "Gene6")
)
RunGSEA(ranks, genesets)
} # }