Convert an AnnData file (h5ad) to a Seurat object or an RDS/qs2 file

Convert an AnnData file (h5ad) to a Seurat object or an RDS/qs2 file

Usage

ConvertAnnDataToSeurat(
  infile,
  outfile = NULL,
  assay = NULL,
  ident = NULL,
  log = NULL
)

Arguments

infile

Input file

outfile

Output file. If "NULL" (default) is given, a temporary file will be created and saved and the Seurat object will be read from it.

assay

Assay name to save in the Seurat object

ident

The name of the identity in metadata after conversion

log

Logger

Value

The Seurat object if outfile is "