Convert an AnnData file (h5ad) to a Seurat object or an RDS/qs2 file — ConvertAnnDataToSeurat • biopipen.utils

Convert an AnnData file (h5ad) to a Seurat object or an RDS/qs2 file

Usage

ConvertAnnDataToSeurat(infile, outfile = NULL, assay = "RNA", log = NULL)

Arguments

infile: Input file
outfile: Output file. If "NULL" (default) is given, a temporary file will be created and saved and the Seurat object will be read from it.
assay: Assay naem to save in the Seurat object
log: Logger

Value

The Seurat object if outfile is "